ORIGINAL PAPER
Compositional shifts in microbial communities in soils supplemented with iron oxide materials and inorganic fertilizer
1
Vietnam Japan University, Vietnam National University, Hanoi, Viet Nam
2
School of Biotechnology and Food Technology, Hanoi University of Science and Technology, Viet Nam
3
Research Institute for Science and Engineering, Waseda University, Japan
4
School of Creative Science and Engineering, Waseda University, Japan
Submission date: 2022-06-01
Final revision date: 2022-07-28
Acceptance date: 2022-08-31
Online publication date: 2022-08-31
Publication date: 2022-10-14
Corresponding author
Yutaka Sakakibara
School of Creative Science and Engineering, Waseda University, 169-8555, Tokyo, Japan
School of Creative Science and Engineering, Waseda University, 169-8555, Tokyo, Japan
Soil Sci. Ann., 2022, 73(2)153389
KEYWORDS
ABSTRACT
Soil microbial communities play an important role in determining soil ecosystem health. However, the effect of chemicals added to the soil on the function and composition of the soil microbiome is not well known. This study evaluated the effects of magnetite materials and inorganic fertilizer on the microbial communities in the soils of both laboratory and field trials. The study used a culture-dependent technique using Czapek agar (CZA) and De Man, Rogosa, and Sharpe (MRS) agar media combined with a modified method for the assessment of soil microbial respiration to account for changes in the microbial community. Results performed with commercial vegetable soil in the laboratory and soils obtained from the field trial both showed an increase in soil respiration rates over time in response to fertilizer and iron oxide materials added to the soil. The iron oxide materials have been shown to have a stronger impact on the soil microbial communities compared to the fertilizer. In addition, the microbial population cultured on the MRS medium was considered to have an important role in total soil respiration. Further studies on the roles of different microbial communities in the soil as well as the combination of different analytical methods should be needed to improve our understanding of the relationship between soil microbial communities and changes in environmental conditions.
REFERENCES (40)
1.
Azarbad, H., Niklińska, M., Laskowski, R., van Straalen, N.M., van Gestel, C.A.M., Zhou, J., He, Z., Wen, C., Röling, W.F.W., 2015. Microbial Community Composition and Functions are Resilient to Metal Pollution along Two Forest Soil Gradients. FEMS Microbiology Ecology 91(1), 1-11. https://doi.org/10.1093/femsec....
2.
Borch, T., Kretzschmar, R., Kappler, A., Cappellen, P.V., Ginder-Vogel, M., Voegelin, A., Campbell, K., 2010. Biogeochemical Redox Processes and Their Impact on Contaminant Dynamics. Environmental Science and Technology 44(1), 15–23. https://doi.org/10.1021/es9026....
3.
Bouskill, N.J., Barker-Finkel, J., Galloway, T.S., Handy, R.D., Ford, T.E., 2010. Temporal Bacterial Diversity Associated with Metal-Contaminated River Sediments. Ecotoxicology 19, 317–328. https://doi.org/10.1007/s10646....
4.
Braunschweig, J., Bosch, J., Meckenstock, R.U., 2013. Iron Oxide Nanoparticles in Geomicrobiology: From Biogeochemistry to Bioremediation. New Biotechnology 30(6), 793–802. https://doi.org/10.1016/j.nbt.....
5.
Cai, Y., Ma, T., Wang, Y., Jia, J., Jia, Y., Liang, C., Feng, X., 2022. Assessing the Accumulation Efficiency of Various Microbial Carbon Components in Soils of Different Minerals. Geoderma 407, 115562. https://doi.org/10.1016/j.geod....
6.
De Dato, G., Lagomarsino, A., Lellei-Kovacs, E., Liberati, D., Abou Jaoudé, R., Marabottini, R., Stazi, S.R., Guidolotti, G., Kovacs-Lang, E., Kroel-Dulay, G., De Angelis, P., 2017. The Response of Soil CO2 Efflux to Water Limitation is Not Merely a Climatic Issue: The Role of Substrate Availability. Forests 8, 241. https://doi.org/10.3390/f80702....
7.
Dombek, T., Dolan, E., Schultz, J., Klarup, D., 2001. Rapid Reductive Dechlorination of Atrazine by Zero-Valent Iron under Acidic Conditions. Environmental Pollution 111(1), 21–27. https://doi.org/10.1016/S0269-....
8.
Fortin, D., Langley, S., 2005. Formation and Occurrence of Biogenic Iron-Rich Minerals. Earth-Science Reviews 72(1–2), 1–19. https://doi.org/10.1016/j.ears....
9.
Frenk, S., Ben-Moshe, T., Dror, I., Berkowitz, B., Minz, D., 2013. Effect of Metal Oxide Nanoparticles on Microbial Community Structure and Function in Two Different Soil Types. PLoS ONE 8(12), e84441. https://doi.org/10.1371/journa....
10.
Grün, A.-L., Manz, W., Kohl, Y.L., Meier, F., Straskraba, S., Jost, C., Drexel, R., Emmerling, C., 2019. Impact of Silver Nanoparticles (AgNP) on Soil Microbial Community Depending on Functionalization, Concentration, Exposure Time, and Soil Texture. Environmental Sciences Europe 31, 1–22. https://doi.org/10.1186/s12302....
11.
Hernandez, T., Berlanga, J.G., Tormos, I., Garcia, C., 2021. Organic versus Inorganic Fertilizers: Response of Soil Properties and Crop Yield. AIMS Geosciences 7(3), 415–439. https://doi.org/10.3934/geosci....
12.
Herndon, E., AlBashaireh, A., Singer, D., Chowdhury, T.R., Gu, B., Graham, D., 2017. Influence of Iron Redox Cycling on Organo-Mineral Associations in Arctic Tundra Soil. Geochimica et Cosmochimica Acta 207, 210–231. https://doi.org/10.1016/j.gca.....
13.
Hill, G.T., Mitkowski, N.A., Aldrich-Wolfe, L., Emele, L.R.., Jurkonie, D.D., Ficke, A., Maldonado-Ramirez, S., Lynch, S.T., Nelson, E.B., 2000. Methods for Assessing the Composition and Diversity of Soil Microbial Communities. Applied Soil Ecology 15, 25-36. https://doi.org/10.1016/S0929-....
14.
Huang, K., Li, Y., Hu, J., Tang, C., Zhang, S., Fu, S., Jiang, P., Ge, T., Luo, Y., Song, X., Li, Y., Cai, Y., 2021. Rates of Soil Respiration Components in Response to Inorganic and Organic Fertilizers in an Intensively-Managed Moso Bamboo Forest. Geoderma 403, 115212. https://doi.org/10.1016/j.geod....
15.
Inagaki, Y., Cong, V.H., Sakakibara, Y., 2016. Identification and application of Phyto-Fenton reactions. Chemosphere 144, 1443-1450. http://dx.doi.org/10.1016/j.ch....
16.
Iovieno, P., Morra, L., Leone, A., Pagano, L., Alfani, A., 2009. Effect of Organic and Mineral Fertilizers on Soil Respiration and Enzyme Activities of Two Mediterranean Horticultural Soils. Biology and Fertility of Soils 45, 555–561. https://doi.org/10.1007/s00374....
17.
Jeewani, P.H., Van Zwieten, L., Zhu, Z., Ge, T., Guggenberger, G., Luo, Y., Xu, J., 2021. Abiotic and Biotic Regulation on Carbon Mineralization and Stabilization in Paddy Soils along Iron Oxide Gradients. Soil Biology and Biochemistry 160, 108312. https://doi.org/10.1016/j.soil....
18.
Jónsson J.O.G., Davíðsdóttir, B., Nikolaidis, N.P., 2017. Valuation of Soil Ecosystem Services. [In:] Banwart, S., Sparks, D. (Eds.), Advances in Agronomy Vol. 142. Academic Press. London. https://doi.org/10.1016/bs.agr....
19.
Kato, S., Hashimoto, K., Watanabe, K., 2012. Microbial Interspecies Electron Transfer via Electric Currents through Conductive Minerals. Proceedings of the National Academy of Sciences 109(25), 10042–10046. https://doi.org/10.1073/pnas.1....
20.
Li, A.-Z., Han, X.-B., Zhang, M.-X., Zhou, Y., Chen, M., Yao, Q., Zhu, H.-H., 2019. Culture-Dependent and -Independent Analyses Reveal the Diversity, Structure, and Assembly Mechanism of Benthic Bacterial Community in the Ross Sea, Antarctica. Frontiers in Microbiology 4, 199. https://doi.org/10.3389/fmicb.....
21.
Li, X., Meng, D., Li, J., Yin, H., Liu, H., Liu, X., Cheng, C., Xiao, Y., Liu, Z., Yan, M., 2017. Response of Soil Microbial Communities and Microbial Interactions to Long-Term Heavy Metal Contamination. Environmental Pollution 231, 908–917. https://doi.org/10.1016/j.envp....
22.
Li, Y., Xu, M., Zou, X., 2006. Heterotrophic Soil Respiration in Relation to Environmental Factors and Microbial Biomass in Two Wet Tropical Forests. Plant and Soil 281, 193–201. https://doi.org/10.1007/s11104....
23.
Li, Y., Xu, M., Zou, X., Xia, Y., 2005. Soil CO2 Efflux and Fungal and Bacterial Biomass in a Plantation and a Secondary Forest in Wet Tropics in Puerto Rico. Plant and Soil 268, 151–160. https://doi.org/10.1007/s11104....
24.
Li-mei, Z., Hong-bin, L., Ji-zong, Z., Jing, H., Bo-ren, W., 2011. Long-Term Application of Organic Manure and Mineral Fertilizer on N2O and CO2 Emissions in a Red Soil from Cultivated Maize-Wheat Rotation in China. Agricultural Sciences in China 10(11), 1748-1757. https://doi.org/10.1016/S1671-....
25.
Lovley, D.R., Coates, J.D., Blunt-Harris, E.L., Phillips, E.J., Woodward, J.C., 1996. Humic Substances as Electron Acceptors for Microbial Respiration. Nature 382(6590), 445–448. https://doi.org/10.1038/382445....
26.
Madrova, P., Vetrovsky, T., Omelka, M., Grunt, M., Smutna, Y., Rapoport, D., Vach, M., Baldrian, P., Kopecky, J., Sagova-Mareckova, M., 2018. A Short-Term Response of Soil Microbial Communities to Cadmium and Organic Substrate Amendment in Long-Term Contaminated Soil by Toxic Elements. Frontiers in Microbiology 9, 2807. https://doi.org/10.3389/fmicb.....
27.
Moebius-Clune, B.N., Moebius-Clune, D.J., Gugino, B.K., Idowu, O.J., Schindelbeck, R.R., Ristow, A.J., van Es, H.M., Thies, J.E., Shayler, H.A., McBride, M.B., Kurtz, K.S.M., Wolfe, D.W., Abawi, G.S., 2016. Comprehensive Assessment of Soil Health–The Cornell Framework, 3.2 Ed. Cornell University, New York.
28.
Park, Y.-D., Park, C.-S., Park, J.-W., 2010. Interaction between Iron Reducing Bacteria and Nano-Scale Zero Valent Iron. Journal of Environmental Engineering and Management 20(4), 233–238.
29.
Pentráková, L., Su, K., Pentrák, M., Stucki, J., 2013. A Review of Microbial Redox Interactions with Structural Fe in Clay Minerals. Clay Minerals 48(3), 543–560. https://doi.org/10.1180/claymi....
30.
Rajput, V.D., Minkina, T., Sushkova, S., Tsitsuashvili, V., Mandzhieva, S., Gorovtsov, A., Nevidomskyaya, D., Gromakova, N., 2018. Effect of Nanoparticles on Crops and Soil Microbial Communities. Journal of Soils and Sediments 18, 2179–2187. https://doi.org/10.1007/s11368....
31.
Rogiers, T., Claesen, J., Van Gompel, A., Vanhoudt, N., Mysara, M., Williamson, A., Leys, N., Van Houdt, R., Boon, N., Mijnendonckx, K., 2021. Soil Microbial Community Structure and Functionality Changes in Response to Long-Term Metal and Radionuclide Pollution. Environmental Microbiology 23, 1670–1683. https://doi.org/10.1111/1462-2....
32.
Stefani, F.O., Bell, T.H., Marchand, C., de la Providencia, I.E., El Yassimi, A., St-Arnaud, M., Hijri, M., 2015. Culture-Dependent and -Independent Methods Capture Different Microbial Community Fractions in Hydrocarbon-Contaminated Soils. PLoS ONE 10(6), e0128272. https://doi.org/10.1371/journa....
33.
Su, C., Lei, L., Duan, Y., Zhang, K.-Q., Yang, J., 2012. Culture-Independent Methods for Studying Environmental Microorganisms: Methods, Application, and Perspective. Applied Microbiology and Biotechnology 93, 993–1003. https://doi.org/10.1007/s00253....
34.
Vitorino, L.C., Bessa, L. A., 2018. Microbial Diversity: The Gap between the Estimated and the Known. Diversity 10, 46. https://doi.org/10.3390/d10020....
35.
Weber, K.A., Achenbach, L.A., Coates, J.D.,2006. Microbes Pumping Iron: Anaerobic Microbial IronOxidation and Reduction. Nature Reviews Microbiology 4, 752–764. https://doi.org/10.1038/nrmicr....
36.
Wei, H., Xiao, G., Guenet, B., Janssens, I.A., Shen, W., 2015. Soil Microbial Community Composition Does Not Predominantly Determine the Variance of Heterotrophic Soil Respiration across Four Subtropical Forests. Scientific Reports 5, 1–6. https://doi.org/10.1038/srep07....
37.
Yang, M., Li, Y., Li, Y., Chang, S.X., Yue, T., Fu, W., Jiang, P., Zhou, G., 2017. Effects of Inorganic and Organic Fertilizers on Soil CO2 Efflux and Labile Organic Carbon Pools in an Intensively Managed Moso Bamboo (Phyllostachys pubescens) Plantation in Subtropical China. Communications in Soil Science and Plant Analysis 48(3), 332-344. https://doi.org/10.1080/001036....
38.
Yang, S., Xiao, Y., Xu, J., 2018. Organic Fertilizer Application Increases the Soil Respiration and Net Ecosystem Carbon Dioxide Absorption of Paddy Fields under Water-Saving Irrigation. Environmental Science and Pollution Research 25, 9958–9968. https://doi.org/10.1007/s11356....
39.
Yao, X-H., Min, H., Lü, Z-H., Yuan, H-P., 2006. Influence of Acetamiprid on Soil Enzymatic Activities and Respiration. European Journal of Soil Biology 42(2), 120-126. https://doi.org/10.1016/j.ejso....
40.
Zhang, H., Huang, M., Zhang, W., Gardea-Torresdey, J.L., White, J.C., Ji, R., Zhao, L., 2020. Silver Nanoparticles Alter Soil Microbial Community Compositions and Metabolite Profiles in Unplanted and Cucumber-Planted Soils. Environmental Science and Technology 54(6), 3334–3342. https://doi.org/10.1021/acs.es....
We process personal data collected when visiting the website. The function of obtaining information about users and their behavior is carried out by voluntarily entered information in forms and saving cookies in end devices. Data, including cookies, are used to provide services, improve the user experience and to analyze the traffic in accordance with the Privacy policy. Data are also collected and processed by Google Analytics tool (more).
You can change cookies settings in your browser. Restricted use of cookies in the browser configuration may affect some functionalities of the website.
You can change cookies settings in your browser. Restricted use of cookies in the browser configuration may affect some functionalities of the website.